Compiling FORTRAN-90 Example Using the openmpi modules

All the sample code can be found on the cluster at /share/apps/samples/openmpi-f90 you can copy them to your home folder using:

$ cp -r /share/apps/samples/openmpi-f90 ./

 

First you need to create your source code. See example mpi_hello.f90  below:

! Filename: mpi_hello.f90
! Description: A parallel hello world program
PROGRAM HelloWorld
include 'mpif.h'
call mpi_init(ierr)
call mpi_comm_size(MPI_COMM_WORLD,npes, ierr)
call mpi_comm_rank(MPI_COMM_WORLD,irank,ierr)
print*,'Hello World! I am ',irank,' of ',npes
call mpi_finalize(ierr)
END PROGRAM
 

Then you must load the correct openmpi module

$ module load openmpi-intel (Loads the openmpi/intel-12 module)
or
$ module load openmpi/intel-11
or
$ module load openmpi/intel-12
or
$ module load openmpi-gnu
or
$ module load openmpi/gcc45
or
$ module load openmpi/gcc46
or
$ module load openmpi/gcc47
 

Then compile the code

$ mpif90 -o openmpi-hello mpi_hello.cpp
 
You should not see any error output, and should have an executable file called lam-hello in current your directory.
CAUTION: If you do not load the module your code will not compile correctly!

Write the jobfile (jobfile.job)

#PBS -N openmpi-hello
#PBS -q @nic-cluster.mst.edu
#PBS -l nodes=2
#PBS -l walltime=01:00:00
#PBS -m abe
#PBS -M joeminer@mst.edu
#PBS -V
cd $PBS_O_WORKDIR
mpirun -np 2 ./openmpi-hello
 

Submit the Job

If you have logged out since you last loaded the module you will need to load the module again.
$ qsub jobfile.job

Output

openmpi-hello.o####
 Hello World! I am            0  of            2
 Hello World! I am            1  of            2
 

Errors

If the output is not what you expected check the openmpi-hello.e#### file.